debian man page for cmtk-fibxform

Query: cmtk-fibxform

OS: debian

Section: 1

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

fibxform(1)					       The Computational Morphometry Toolkit					       fibxform(1)

NAME
fibxform - Apply coordinate transformations to point coordinates in .fib file.
SYNOPSIS
fibxform XformList
DESCRIPTION
A file with fiber tracking results from the UNC Fiber Tracking tool is read from Standard Input and one or more (concatenated) coordinate transformations are applied to all fiber point coordinates. The result is written to Standard Output, again in UNC fiber file format.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --inversion-tolerance <double> Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase failure rate. [Default: 0.001] --source-image <image-path> Set source image of the transformation (i.e., an image defining the space in which fiber tracking was performed) to correct for dif- ferences in orientation and coordinate space. [Default: NONE] --target-image <image-path> Set target image of the transformation (i.e., the image that the fiber track points are mapped into) to correct for differences in orientation and coordinate space. [Default: NONE]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 fibxform(1)
Related Man Pages
cmtk-convert_warp(1) - debian
cmtk-fib2image(1) - debian
cmtk-unsplit(1) - debian
cmtk-vtkxform(1) - debian
cmtk-xform2dfield(1) - debian
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