debian man page for cmtk-average_images

Query: cmtk-average_images

OS: debian

Section: 1

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

average_images(1)				       The Computational Morphometry Toolkit					 average_images(1)

NAME
average_images - Average images
SYNOPSIS
average_images [options] image0 ...
DESCRIPTION
This tool computes pixelwiase average, variance, standard deviation, z-score, or entropy images from a list of user-provided intensity images.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --mode Mode of averaging operation Supported values: "avg", "var", "stdev", "zscore", "entropy", where the default is "avg", or use one of the following: --avg Compute average (i.e., mean) image [This is the default] --var Compute variance image --stdev Compute standard deviation image --zscore Compute z-score image --entropy Compute pixel-by-pixel population entropy image Data Preprocessing --log, -l Apply log to input data --abs, -a Use absolute input values --normalize-mean-stdev, -n Normalize image intensities using means and standard deviations --set-padding-value <double> Define padding value in input images [Default: disabled] Output Options --outfile-name <string>, -o <string> Output file name [Default: average.nii ] --type Scalar data type of output image. Supported values: "float", "double", where the default is "float", or use one of the following: --float Single-precision float. [This is the default] --double Double-precision float.
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 average_images(1)
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