Query: cmtk-asegment_sri24
OS: debian
Section: 1
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
asegment_sri24(1) The Computational Morphometry Toolkit asegment_sri24(1)NAMEasegment_sri24 - Segmentation using SRI24 atlasSYNOPSISasegment_sri24 TargetImage OutputImageDESCRIPTIONRegister a target image to a selected channel of the SRI24 human brain atlas, then reformat one of the atlas label maps to the target image. Note: it is assume that the target image is skull-stripped, i.e., contains only the brain.OPTIONSGlobal Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --xml Write command line syntax specification in XML markup (for Slicer integration). --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --fast, -f Fast mode. --registration-channel The SRI24 channel used for registration to the target image. Supported values: "spgr", "early-fse", "late-fse", "fa", where the default is "spgr", or use one of the following: --spgr SPGR (T1-weighted) structural channel [This is the default] --early-fse Early-echo (PD-weighted) fast spin echo channel --late-fse Late-echo (T2-weighted) fast spin echo channel --fa Fractional anisotropy channel, derived from diffusion tensor images --label-map The SRI24 label map that is reformatted to the target image. Supported values: "tzo116plus", "lpba40", "tissue", where the default is "tzo116plus", or use one of the following: --tzo116plus Extended cortical parcellation template based on Tzourio-Mazoyer AAL 116 region template. [This is the default] --lpba40 Template based on the 40 subject LONI Probabilistic Brain Atlas segmentation. --tissue SRI24 maximum likelihood three compartment (GM, WM, CSF) tissue segmentation map.AUTHORSTorsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. RussakoffLICENSEhttp://www.fsf.org/licensing/licenses/gpl.htmlBUGSReport bugs at http://nitrc.org/projects/cmtk/ACKNOWLEDGMENTSFrom April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 asegment_sri24(1)