debian man page for bowtie2-inspect

BOWTIE2-INSPECT(1)						   User Commands						BOWTIE2-INSPECT(1)

NAME
       bowtie2-inspect - extracts information from a bowtie2 index

SYNOPSIS
       bowtie2-inspect [options]* <bt2_base>

DESCRIPTION
       Bowtie 2 version 2.0.0-beta6 by Ben Langmead (blangmea@jhsph.edu)

       <bt2_base>
	      bt2 filename minus trailing .1.bt2/.2.bt2

	      By  default,  prints  FASTA records of the indexed nucleotide sequences to standard out.	With -n, just prints names.  With -s, just
	      prints a summary of the index parameters and sequences.  With -e, preserves colors if applicable.

OPTIONS
       -a/--across <int>
	      Number of characters across in FASTA output (default: 60)

       -n/--names
	      Print reference sequence names only

       -s/--summary
	      Print summary incl. ref names, lengths, index properties

       -e/--bt2-ref
	      Reconstruct reference from .bt2 (slow, preserves colors)

       -v/--verbose
	      Verbose output (for debugging)

       -h/--help
	      print detailed description of tool and its options

       --help print this usage message

       64-bit Built on lxcsid Fri Jun  1 20:13:13 UTC 2012 Compiler: gcc version 4.7.0 (Debian 4.7.0-8) Options: -O3  -m64  -msse2  -funroll-loops
       -g3 Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

bowtie2-inspect version 2.0.0-beta6				     June 2012							BOWTIE2-INSPECT(1)