swiss::ocs(3pm) [debian man page]

SWISS::OCs(3pm) 					User Contributed Perl Documentation					   SWISS::OCs(3pm)

Name
       SWISS::OCs

Description
       SWISS::OCs represents the OC lines within an SWISS-PROT + TrEMBL entry as specified in the user manual
       http://www.expasy.org/sprot/userman.html .

Inherits from
       SWISS::ListBase.pm

Attributes
       "list"
	   Each list element is an item giving one part of the taxonomic classification of the source organism of the protein.

Methods
   Standard methods
       new
       fromText
       toText
       sort

perl v5.10.1							    2006-01-26							   SWISS::OCs(3pm)

SWISS::DTs(3pm) 					User Contributed Perl Documentation					   SWISS::DTs(3pm)

Name
       SWISS::DTs

Description
       SWISS::DTs represents the DT lines within an Swiss-Prot + TrEMBL entry as specified in the user manual
       http://www.expasy.org/sprot/userman.html .

Inherits from
       SWISS::BaseClass.pm

Attributes
       "CREATED_date"
	   Creation date

       "ANN_date"
	   Last annotation update

       "SQ_date"
	   Last Sequence update

       "CREATED_rel"
	   Created for release

       "ANN_rel"
	   Last annotation for release

       "SQ_rel"
	   Last sequence update for release

       "ANN_version"
	   Version number for entry annotation

       "SQ_version"
	   Version number for sequence

Methods
   Standard methods
       new
       fromText
       toText
       sort

   Writing methods
       set_Created ($date, $release)
       set_AnnotationUpdate ($date, $release[, $version])
       set_SequenceUpdate ($date, $release[, $version])

TRANSITION

       The format of the DT line will change in early 2004 from:

	DT   01-JUL-1993 (Rel. 26, Created)
	DT   01-JUL-1993 (Rel. 26, Last sequence update)
	DT   28-FEB-2003 (Rel. 41, Last annotation update)

       to:

	DT   01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
	DT   01-JUL-1993, sequence version 36.
	DT   28-FEB-2003, entry version 54.

       This module supports both formats. To convert an entry from the old to the new format, do:

	$entry->DTs->CREATED_rel("UniProtKB/Swiss-Prot");
	$entry->DTs->ANN_version(54);
	$entry->DTs->SQ_version(36);

perl v5.10.1							    2008-07-11							   SWISS::DTs(3pm)