go::model::seq(3pm) debian man page | unix.com

GO::Model::Seq(3pm)					User Contributed Perl Documentation				       GO::Model::Seq(3pm)

NAME
	 GO::Model::Seq - biological sequence

SYNOPSIS
	   print $gene_product->seq->seq;

DESCRIPTION
       represents a biological sequence; uses the bioperl Bio::PrimarySeq class

       any call that you can do on a bioperl sequence object, you can do here, with the addition of the calls below

       to get bioperl, see http://www.bioperl.org

   pseq
	 Usage	 -
	 Returns - Bio::PrimarySeq
	 Args	 -

   md5checksum
	 Usage	 - my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5)
	 Returns - 32 char hex string
	 Args	 - 32 char hex string [optional]

       checksum for seq - easy way to check if it has been changed etc

       (requires Digest::MD5 module from CPAN)

   to_fasta
	 Usage	 -
	 Returns -
	 Args	 -

   add_xref
	 - Usage : $term->add_xref($xref);
	 - Args  : GO::Term::Xref

perl v5.14.2							    2013-02-07						       GO::Model::Seq(3pm)