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bio::tools::prints(3pm) [debian man page]

Bio::Tools::Prints(3pm) 				User Contributed Perl Documentation				   Bio::Tools::Prints(3pm)

NAME

       Bio::Tools::Prints - Parser for FingerPRINTScanII program

SYNOPSIS

	 use Bio::Tools::Prints;
	 my $prints_parser = Bio::Tools::Prints->new(-fh =>$filehandle );
	 while( my $prints_feat = $prints_parser->next_result ) {
	       push @prints_feat, $prints_feat;
	 }

DESCRIPTION

	PRINTScan II is a PRINTS fingerprint identification algorithm.
	Copyright (C) 1998,1999  Phil Scordis

FEEDBACK

   Mailing Lists
	User feedback is an integral part of the evolution of this and other
	Bioperl modules. Send your comments and suggestions preferably to
	the Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
	Report bugs to the Bioperl bug tracking system to help us keep track
	of the bugs and their resolution. Bug reports can be submitted via
	the web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Balamurugan Kumarasamy
	bala@tll.org.sg
	juguang@tll.org.sg

APPENDIX

	The rest of the documentation details each of the object methods.
	Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::Prints->new(-fh=>$filehandle);
	Function: Builds a new Bio::Tools::Prints object
	Returns : Bio::Tools::Prints
	Args	: -filename
		  -fh (filehandle)

   next_result
	Title	: next_result
	Usage	: my $feat = $prints_parser->next_result
	Function: Get the next result set from parser data
	Returns : L<Bio::SeqFeature::Generic>
	Args	: none

   create_feature
	Title	: create_feature
	Usage	: my $feat=$prints_parser->create_feature($feature,$seqname)
	Function: creates a SeqFeature Generic object
	Returns : L<Bio::SeqFeature::FeaturePair>
	Args	:

   print_sac
	Title	: print_sac
	Usage	: $prints_parser->print_sac($print_sac)
	Function: get/set for print_sac
	Returns :
	Args	:

   seqname
	Title	: seqname
	Usage	: $prints_parser->seqname($seqname)
	Function: get/set for seqname
	Returns :
	Args	:

perl v5.14.2							    2012-03-02						   Bio::Tools::Prints(3pm)

Check Out this Related Man Page

Bio::Tools::RepeatMasker(3pm)				User Contributed Perl Documentation			     Bio::Tools::RepeatMasker(3pm)

NAME

       Bio::Tools::RepeatMasker - a parser for RepeatMasker output

SYNOPSIS

	   use Bio::Tools::RepeatMasker;
	   my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
	   while( my $result = $parser->next_result ) {
	     # get some value
	   }

DESCRIPTION

       A parser for RepeatMasker output

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Shawn Hoon
       Email shawnh@fugu-sg.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::RepeatMasker->new();
	Function: Builds a new Bio::Tools::RepeatMasker object
	Returns : Bio::Tools::RepeatMasker
	Args	: -fh/-file => $val, for initing input, see Bio::Root::IO

   next_result
	Title	: next_result
	Usage	: my $r = $rpt_masker->next_result
	Function: Get the next result set from parser data
	Returns : Bio::SeqFeature::FeaturePair
		  Feature1 is the Query coordinates and Feature2 is the Hit
	Args	: none

perl v5.14.2							    2012-03-02					     Bio::Tools::RepeatMasker(3pm)
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