Bio::Tools::Primer::Pair(3pm) User Contributed Perl Documentation Bio::Tools::Primer::Pair(3pm)NAME
Bio::Tools::Primer::Pair - two primers on left and right side
SYNOPSIS
use Bio::Tools::Primer::Pair;
my $pair = Bio::Tools::Primer::Pair->new( -left => $leftp , -right => $rightp);
# helper functions
print "GC percentage different",$pf->gc_difference(),"
";
print "product length is ",$pf->product_length,"
";
DESCRIPTION
Primer Pairs represents one primer in a primer pair. This object is mainly for designing primers, and probably principly used in the primer
design system
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Ewan Birney
Email birney-at-ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::Tools::Primer::Pair(3pm)
Check Out this Related Man Page
Bio::Tools::Run::Phylo::Phylip::PhylipConf(3pm) User Contributed Perl Documentation Bio::Tools::Run::Phylo::Phylip::PhylipConf(3pm)NAME
Bio::Tools::Run::Phylo::Phylip::PhylipConf
SYNOPSIS
use Bio::Tools::Run::Phylo::Phylip::PhylipConf;
my %menu = %{$Bio::Tools::Run::Phylo::Phylip::PhylipConf::Menu->{$version}->{'PROTDIST'}};
DESCRIPTION
A configuration for managing menu configuration differences between version 3.5 and 3.6
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Shawn Hoon
Email shawnh@fugu-sg.org
CONTRIBUTORS
Email:jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.12.3 2011-06-18 Bio::Tools::Run::Phylo::Phylip::PhylipConf(3pm)
OIOIC is a completely new object-oriented mechanism for the C programming language.
Please download the "OIOIC-Primer-2nd-Edition-English.tar.gz". (the English version of << OIOIC Primer >> )
http://code.google.com/p/oioic/downloads/list
Welcome your advice!
Using OIOIC, you can describe... (7 Replies)
Background:
I have a file of thousands of potential SSR primers from Batch Primer 3.
I can't use primers that will contain the same sequence ID or sequence as another primer.
I have some basic shell scripting skills, but not enough to handle this.
What you need to know:
I need to remove the... (1 Reply)