Bio::Tools::Hmmpfam(3pm) User Contributed Perl Documentation Bio::Tools::Hmmpfam(3pm)
NAME
Bio::Tools::Hmmpfam - Parser for Hmmpfam program
SYNOPSIS
use Bio::Tools::Hmmpfam;
my @hmmpfam_feat;
my $hmmpfam_parser = Bio::Tools::Hmmpfam->new(-fh =>$filehandle );
while( my $hmmpfam_feat = $hmmpfam_parser->next_result ) {
push @hmmpfam_feat, $hmmpfam_feat;
}
DESCRIPTION
Parser for Hmmpfam program. See also Bio::SearchIO::hmmer.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Balamurugan Kumarasamy
Email: fugui@worf.fugu-sg.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Tools::Hmmpfam->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Hmmpfam object
Returns : Bio::Tools::Hmmpfam
Args : -filename
-fh (filehandle)
next_result
Title : next_result
Usage : my $feat = $hmmpfam_parser->next_result
Function: Get the next result set from parser data
Returns : L<Bio::SeqFeature::Generic>
Args : none
create_feature
Title : create_feature
Usage : my $feat=$hmmpfam_parser->create_feature($feature,$seqname)
Function: creates a SeqFeature Generic object
Returns : L<Bio::SeqFeature::Generic>
Args :
seqname
Title : seqname
Usage : obj->seqname($seqname)
Function: Internal(not to be used directly)
Returns :
Args : seqname
perl v5.14.2 2012-03-02 Bio::Tools::Hmmpfam(3pm)