bio::tools::alignfactory(3pm) debian man page | unix.com

Bio::Tools::AlignFactory(3pm)				User Contributed Perl Documentation			     Bio::Tools::AlignFactory(3pm)

NAME
       Bio::Tools::AlignFactory - Base object for alignment factories

SYNOPSIS
       You wont be using this as an object, but using a dervied class like Bio::Tools::pSW

DESCRIPTION
       Holds common Alignment Factory attributes in place

CONTACT
       http://bio.perl.org/ or birney@sanger.ac.uk

APPENDIX
       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   kbyte
	Title	  : kbyte()
	Usage	  : set/gets the amount of memory able to be used
	Function  :
		  : $factory->kbyte(200);
		  :
	Returns   :
	Argument  : memory in kilobytes

   report
	Title	  : report()
	Usage	  : set/gets the report boolean to issue reports or not
	Function  :
		  : $factory->report(1); # reporting goes on
		  :
	Returns   : n/a
	Argument  : 1 or 0

   set_memory_and_report
	Title	: set_memory_and_report
	Usage	: Only used by subclasses.
	Function:
	Example :
	Returns :
	Args	:

perl v5.14.2							    2012-03-02					     Bio::Tools::AlignFactory(3pm)