bio::seqfeature::gene::promoter(3pm) [debian man page]

Bio::SeqFeature::Gene::Promoter(3pm)			User Contributed Perl Documentation		      Bio::SeqFeature::Gene::Promoter(3pm)

NAME

       Bio::SeqFeature::Gene::Promoter - Describes a promoter

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the object here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - David Block
       Email dblock@gene.pbi.nrc.ca

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

perl v5.14.2							    2012-03-02				      Bio::SeqFeature::Gene::Promoter(3pm)

Bio::SeqFeature::Gene::UTR(3pm) 			User Contributed Perl Documentation			   Bio::SeqFeature::Gene::UTR(3pm)

NAME

       Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region
		 that is part of a transcriptional unit

SYNOPSIS

       See documentation of methods

DESCRIPTION

       A UTR is a Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - David Block
       Email dblock@gene.pbi.nrc.ca

CONTRIBUTORS

       This is based on the Gene Structure scaffolding erected by Hilmar Lapp (hlapp@gmx.net).

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	:
	Function: We override the constructor here to set is_coding to false
		  unless explicitly overridden.

	Example :
	Returns :
	Args	:

   primary_tag
	Title	: primary_tag
	Usage	: $tag = $feat->primary_tag()
	Function: Returns the primary tag for a feature,
		  eg 'utr5prime'.  This method insures that 5prime/3prime information
		  is uniformly stored
	Returns : a string
	Args	: none

perl v5.14.2							    2012-03-02					   Bio::SeqFeature::Gene::UTR(3pm)