Bio::Biblio::Ref(3pm) User Contributed Perl Documentation Bio::Biblio::Ref(3pm)
NAME
Bio::Biblio::Ref - Representation of a bibliographic reference
SYNOPSIS
$obj = Bio::Biblio::Ref->new(-type => 'Letter',
-title => 'Onegin to Tatiana');
#--- OR ---
$obj = Bio::Biblio::Ref->new();
$obj->type ('Letter');
DESCRIPTION
A storage object for a general bibliographic reference (a citation). See its place in the class hierarchy in
http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif
Attributes
The following attributes are specific to this class, and they are inherited by all citation types.
author_list_complete values: 'Y' (default) or 'N'
authors type: array ref of Bio::Biblio::Provider's
cross_references type: array ref of Bio::Annotation::DBLink's
cross_references_list_complete values: 'Y' (default) or 'N'
abstract
abstract_language
abstract_type
codes type: hash ref
contributors type: array ref of Bio::Biblio::Provider's
date
date_completed
date_created
date_revised
format
identifier
keywords
language
last_modified_date
publisher type: Bio::Biblio::Provider
repository_subset
rights
spatial_location
subject_headings type: hash ref
subject_headings_source
temporal_period
title
toc
toc_type
type
SEE ALSO
o OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
o Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Heikki Lehvaslaiho (heikki-at-bioperl-dot-org), Martin Senger (senger@ebi.ac.uk)
COPYRIGHT
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are preceded with a _
add_cross_reference
Usage : $self->add_cross_reference
(Bio::Annotation::DBLink->new(-database => 'EMBL',
-primary_id => 'V00808');
Function: adding a link to a database entry
Returns : new value of 'cross_references'
Args : an object of type Bio::Annotation::DBLink
add_author
Usage : $self->add_author (Bio::Biblio::Person->new(-lastname => 'Novak');
Function: adding an author to a list of authors
Returns : new value of 'authors' (a full list)
Args : an object of type Bio::Biblio::Provider
add_contributor
Usage : $self->add_contributor (Bio::Biblio::Person->new(-lastname => 'Novak');
Function: adding a contributor to a list of contributors
Returns : new value of 'contributors' (a full list)
Args : an object of type Bio::Biblio::Provider
perl v5.14.2 2012-03-02 Bio::Biblio::Ref(3pm)