debian man page for tfbs::sitepair

TFBS::SitePair(3pm)					User Contributed Perl Documentation				       TFBS::SitePair(3pm)

   pattern
	Title	: pattern
	Usage	: my $pattern = $sitepair->pattern();  # gets the pattern
						       # sets the pattern to $pwm
	Function: gets the pattern object associated with the site pair
	Returns : pattern object, here TFBS::Matrix::PWM object
	Args	: none (get-only method)

   GFF
	Title	: GFF
	Usage	: print $site->GFF();
		: print $site->GFF($gff_formatter)
	Function: returns a "standard" multiline GFF string
	Returns : a string (multiline, newline terminated)
	Args	: a $gff_formatter function reference (optional)

   site1 =head2 site2
	Title	: site1
		  site2
	Usage	: my $site1 = $sitepair->site1();

	Function:  Returns individual TFBS::Site objects, from the site pair
	Returns : a TFBS::Site
	Args	: none

perl v5.14.2							    2008-01-24						       TFBS::SitePair(3pm)