Query: bio::treeio::cluster
OS: debian
Section: 3pm
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
Bio::TreeIO::cluster(3pm) User Contributed Perl Documentation Bio::TreeIO::cluster(3pm)NAMEBio::TreeIO::cluster - A TreeIO driver module for parsing Algorithm::Cluster::treecluster() outputSYNOPSIS# do not use this module directly use Bio::TreeIO; use Algorithm::Cluster; my ($result, $linkdist) = Algorithm::Cluster::treecluster( distances => $matrix ); my $treeio = Bio::TreeIO->new( -format => 'cluster', -result => $result, -linkdist => $linkdist, -labels => $labels ); my $tree = $treeio->next_tree;DESCRIPTIONThis is a driver module for parsing Algorithm::Cluster::treecluster() output.FEEDBACKMailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Guillaume Rousse Email Guillaume-dot-Rousse-at-inria-dot-frCONTRIBUTORSJason Stajich - jason-at-bioperl-dot-orgAPPENDIXThe rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::TreeIO::cluster->new(); Function: Builds a new Bio::TreeIO::cluster object for reading Algorithm::Cluster::treecluster output Returns : Bio::TreeIO::cluster Args :-result => Algorithm::Cluster result -linkdist => distance between links -labels => node labels next_tree Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none write_tree Title : write_tree Usage : Function: Sorry not possible with this format Returns : none Args : none perl v5.14.2 2012-03-02 Bio::TreeIO::cluster(3pm)
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