debian man page for bio::treeio::cluster

Query: bio::treeio::cluster

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::TreeIO::cluster(3pm)				User Contributed Perl Documentation				 Bio::TreeIO::cluster(3pm)

NAME
Bio::TreeIO::cluster - A TreeIO driver module for parsing Algorithm::Cluster::treecluster() output
SYNOPSIS
# do not use this module directly use Bio::TreeIO; use Algorithm::Cluster; my ($result, $linkdist) = Algorithm::Cluster::treecluster( distances => $matrix ); my $treeio = Bio::TreeIO->new( -format => 'cluster', -result => $result, -linkdist => $linkdist, -labels => $labels ); my $tree = $treeio->next_tree;
DESCRIPTION
This is a driver module for parsing Algorithm::Cluster::treecluster() output.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Guillaume Rousse Email Guillaume-dot-Rousse-at-inria-dot-fr
CONTRIBUTORS
Jason Stajich - jason-at-bioperl-dot-org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::TreeIO::cluster->new(); Function: Builds a new Bio::TreeIO::cluster object for reading Algorithm::Cluster::treecluster output Returns : Bio::TreeIO::cluster Args :-result => Algorithm::Cluster result -linkdist => distance between links -labels => node labels next_tree Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none write_tree Title : write_tree Usage : Function: Sorry not possible with this format Returns : none Args : none perl v5.14.2 2012-03-02 Bio::TreeIO::cluster(3pm)
Related Man Pages
bio::factory::treefactoryi(3pm) - debian
bio::treeio::newickparser(3pm) - debian
bio::treeio::newick(3pm) - debian
bio::treeio::nexml(3pm) - debian
bio::treeio::pag(3pm) - debian
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