debian man page for bio::tools::run::analysisfactory::soap

Bio::Tools::Run::AnalysisFactory::soap(3pm)		User Contributed Perl Documentation	       Bio::Tools::Run::AnalysisFactory::soap(3pm)

NAME
       Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools

SYNOPSIS
       Do not use this object directly, it is recommended to access it and use it through the Bio::Tools::Run::AnalysisFactory module:

	 use Bio::Tools::Run::AnalysisFactory;
	 my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
	    ->available_analyses;
	 print join ("
", @$list) . "
";

DESCRIPTION
       All public methods are documented in the interface module "Bio::Factory::AnalysisI".

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 http://redmine.open-bio.org/projects/bioperl/

AUTHOR
       Martin Senger (martin.senger@gmail.com)

COPYRIGHT
       Copyright (c) 2003, Martin Senger and EMBL-EBI.	All Rights Reserved.

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER
       This software is provided "as is" without warranty of any kind.

SEE ALSO
       o   http://www.ebi.ac.uk/soaplab/Perl_Client.html

BUGS AND LIMITATIONS
       None known at the time of writing this.

APPENDIX
       The main documentation details are in "Bio::Factory::AnalysisI".

   _initialize
	Usage	: my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
		  (_initialize is internally called from the 'new()' method)
	Returns : nothing interesting
	Args	: This module recognises and uses following arguments:
		    -location
		    -httpproxy
		    -soap
		  Additionally, the main module Bio::Tools::Run::AnalysisFactory
		  recognises also:
		    -access

       It populates calling object with the given arguments, and then - for some attributes and only if they are not yet populated - it assigns
       some default values.

       This is an actual new() method (except for the real object creation and its blessing which is done in the parent class Bio::Root::Root in
       method _create_object).

       Note that this method is called always as an object method (never as a class method) - and that the object who calls this method may
       already be partly initiated (from Bio::Tools::Run::AnalysisFactory::new method); so if you need to do some tricks with the 'class
       invocation' you need to change Bio::Tools::Run::AnalysisFactory new method, not this one.

       -location
	   A URL (also called an endpoint) defining where is located a Web Service functioning for this object.

	   Default is "http://www.ebi.ac.uk/soaplab/services" (a service running at European Bioinformatics Institute on top of most of the EMBOSS
	   analyses, and on top of few others).

	   For example, if you run your own Web Service using Java(TM) Apache Axis toolkit, the location might be something like
	   "http://localhost:8080/axis/services".

       -httpproxy
	   In addition to the location parameter, you may need to specify also a location/URL of an HTTP proxy server (if your site requires one).
	   The expected format is "http://server:port".  There is no default value.

       -soap
	   Defines your own SOAP::Lite object. Useful if you need finer-grained access to many features and attributes of the wonderful Paul
	   Kulchenko's module.

   VERSION and Revision
	Usage	: print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
		  print $Bio::Tools::Run::AnalysisFactory::soap::Revision;

perl v5.12.3							    2011-06-18			       Bio::Tools::Run::AnalysisFactory::soap(3pm)