debian man page for bio::tools::prositescan

Bio::Tools::PrositeScan(3pm)				User Contributed Perl Documentation			      Bio::Tools::PrositeScan(3pm)

NAME
       Bio::Tools::PrositeScan - Parser for ps_scan result

SYNOPSIS
	 use Bio::Tools::PrositeScan;

	 my $factory = Bio::Tools::PrositeScan->new(
	     -file => 'out.PrositeScan'
	 );

	 while(my $match = $factory->next_prediction){
	     #	$match is of Bio::SeqFeature::FeaturePair
	     my $q_id = $fatch->feature1->seq_id;
	     my $h_id = $fatch->feature2->seq_id;
	 }

DESCRIPTION
       This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a
       Bio::SeqFeature::FeaturePair object.

AUTHOR
       Juguang Xiao, juguang@tll.org.sg

   new
	 Title	 : new
	 Usage	 : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
		   Bio::Tools::PrositeScan->new(-fh => *FH);
	 Returns : L<Bio::Tools::PrositeScan>

   next_prediction
	 Title	 : new
	 Usage	 :
	     while($result = $factory->next_prediction){
		 ;
	     }

	 Returns : a Bio::SeqFeature::FeaturePair object

perl v5.14.2							    2012-03-02					      Bio::Tools::PrositeScan(3pm)