debian man page for bio::tools::profile

Query: bio::tools::profile

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::Tools::Profile(3pm)				User Contributed Perl Documentation				  Bio::Tools::Profile(3pm)

NAME
Bio::Tools::Profile - parse Profile output
SYNOPSIS
use Bio::Tools::Profile; my $profile_parser = Bio::Tools::Profile->new(-fh =>$filehandle ); while( my $profile_feat = $profile_parser->next_result ) { push @profile_feat, $profile_feat; }
DESCRIPTION
Parser for Profile output
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Balamurugan Kumarasamy Email: fugui@worf.fugu-sg.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Tools::Profile->new(); Function: Builds a new Bio::Tools::Profile object Returns : Bio::Tools::Profile Args : -filename -fh ($filehandle) next_result Title : next_result Usage : my $feat = $profile_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::FeaturePair> Args : none create_feature Title : create_feature Usage : my $feat= $profile_parser->create_feature($feature) Function: creates a Bio::SeqFeature::FeaturePair object Returns : L<Bio::SeqFeature::FeaturePair> Args : perl v5.14.2 2012-03-02 Bio::Tools::Profile(3pm)
Related Man Pages
bio::tools::coil(3pm) - debian
bio::tools::emboss::palindrome(3pm) - debian
bio::tools::footprinter(3pm) - debian
bio::tools::profile(3pm) - debian
bio::tools::signalp(3pm) - debian
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