debian man page for bio::tools::footprinter

Bio::Tools::FootPrinter(3pm)				User Contributed Perl Documentation			      Bio::Tools::FootPrinter(3pm)

NAME
       Bio::Tools::FootPrinter - write sequence features in FootPrinter format

SYNOPSIS
	   use Bio::Tools::FootPrinter;

	   my $tool = Bio::Tools::FootPrinter->new(-file=>"footprinter.out");

	   while (my $result = $tool->next_feature){
	     foreach my $feat($result->sub_SeqFeature){
	       print $result->seq_id."	".$feat->start."	".$feat->end."	".$feat->seq->seq."
";
	     }
	   }

DESCRIPTION
       This module writes sequence features in FootPrinter format.  See <http://bio.cs.washington.edu/software.html> for more details.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Shawn Hoon
       Email shawnh@fugu-sg.org

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::FootPrinter->new();
	Function: Builds a new Bio::Tools::FootPrinter object
	Returns : Bio::Tools::FootPrinter
	Args	: -fh/-file => $val, # for initing input, see Bio::Root::IO

   next_feature
	Title	: next_feature
	Usage	: my $r = $footprint->next_feature
	Function: Get the next feature from parser data
	Returns : L<Bio::SeqFeature::Generic>
	Args	: none

   _add_feature
	Title	: _add_feature
	Usage	: $footprint->_add_feature($feat)
	Function: Add feature to array
	Returns : none
	Args	: none

   _parse_predictions
	Title	: _parse_predictions
	Usage	: my $r = $footprint->_parse_predictions
	Function: do the parsing
	Returns : none
	Args	: none

   _predictions_parsed
	Title	: _predictions_parsed
	Usage	: $footprint->_predictions_parsed(1)
	Function: Get/Set for whether predictions parsed
	Returns : 1/0
	Args	: none

   _parse
	Title	: _parse
	Usage	: $footprint->_parse($name,$seq,$pattern)
	Function: do the actual parsing
	Returns : L<Bio::SeqFeature::Generic>
	Args	: none

perl v5.14.2							    2012-03-02					      Bio::Tools::FootPrinter(3pm)