debian man page for bio::seqfeature::gene::exoni

Query: bio::seqfeature::gene::exoni

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::SeqFeature::Gene::ExonI(3pm)			User Contributed Perl Documentation			 Bio::SeqFeature::Gene::ExonI(3pm)

NAME
Bio::SeqFeature::Gene::ExonI - Interface for a feature representing an exon
SYNOPSIS
See documentation of methods.
DESCRIPTION
A feature representing an exon. An exon in this definition is transcribed and at least for one particular transcript not spliced out of the pre-mRNA. However, it does not necessarily code for amino acid.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Hilmar Lapp Email hlapp@gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ is_coding Title : is_coding Usage : if($exon->is_coding()) { # do something } Function: Whether or not the exon codes for amino acid. Returns : TRUE if the object represents a feature translated into protein, and FALSE otherwise. Args : cds Title : cds() Usage : $cds = $exon->cds(); Function: Get the coding sequence of the exon as a sequence object. The returned sequence object must be in frame 0, i.e., the first base starts a codon. An implementation may return undef, indicating that a coding sequence does not exist, e.g. for a UTR (untranslated region). Returns : A L<Bio::PrimarySeqI> implementing object. Args : perl v5.14.2 2012-03-02 Bio::SeqFeature::Gene::ExonI(3pm)
Related Man Pages
bio::seqfeature::gene::exon(3pm) - debian
bio::seqfeature::gene::exoni(3pm) - debian
bio::tools::est2genome(3pm) - debian
bio::tools::prediction::gene(3pm) - debian
bio::tools::spidey::exon(3pm) - debian
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