debian man page for bio::searchio::xml::blasthandler

Bio::SearchIO::XML::BlastHandler(3pm)			User Contributed Perl Documentation		     Bio::SearchIO::XML::BlastHandler(3pm)

NAME
       Bio::SearchIO::XML::BlastHandler - XML Handler for NCBI Blast XML parsing.

SYNOPSIS
	 # This is not to be used directly.

DESCRIPTION
       This is the XML handler for BLAST XML parsing. Currently it passes elements off to the event handler, which is ultimately responsible for
       Bio::Search object generation.

       This was recently split off from the original code for Bio::SearchIO::blastxml primarily for maintenance purposes.

DEPENDENCIES
       In addition to parts of the Bio:: hierarchy, this module uses:

	XML::SAX::Base

       which comes with the XML::SAX distribution.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich, Chris Fields
       Email jason-at-bioperl.org Email cjfields-at-uiuc dot edu

APPENDIX
       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   SAX methods
   start_document
	Title	: start_document
	Usage	: $parser->start_document;
	Function: SAX method to indicate starting to parse a new document
	Returns : none
	Args	: none

   end_document
	Title	: end_document
	Usage	: $parser->end_document;
	Function: SAX method to indicate finishing parsing a new document
	Returns : Bio::Search::Result::ResultI object
	Args	: none

   start_element
	Title	: start_element
	Usage	: $parser->start_element($data)
	Function: SAX method to indicate starting a new element
	Returns : none
	Args	: hash ref for data

   end_element
	Title	: end_element
	Usage	: $parser->end_element($data)
	Function: Signals finishing an element
	Returns : Bio::Search object dpending on what type of element
	Args	: hash ref for data

   characters
	Title	: characters
	Usage	: $parser->characters($data)
	Function: Signals new characters to be processed
	Returns : characters read
	Args	: hash ref with the key 'Data'

perl v5.14.2							    2012-03-02				     Bio::SearchIO::XML::BlastHandler(3pm)