debian man page for bio::ontology::oboterm

Query: bio::ontology::oboterm

OS: debian

Section: 3pm

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

Bio::Ontology::OBOterm(3pm)				User Contributed Perl Documentation			       Bio::Ontology::OBOterm(3pm)

NAME
Bio::Ontology::OBOterm - representation of OBO terms
SYNOPSIS
$term = Bio::Ontology::OBOterm->new ( -identifier => "GO:0005623", -name => "Cell", -definition => "The basic structural and functional unit ...", -is_obsolete => 0, -comment => "" ); $term->add_reference( @refs ); $term->add_secondary_id( @ids ); $term->add_synonym( @synonym ); # etc.
DESCRIPTION
This is data holder class for OBO terms. It is currently a dummy class since we anticipate that the OBO term will become more richer with more features being added to OBO flat-file format.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Sohel Merchant Email: s-merchant@northwestern.edu Address: Northwestern University Center for Genetic Medicine (CGM), dictyBase Suite 1206, 676 St. Clair st Chicago IL 60611
APPENDIX
The rest of the documentation details each of the object methods. new Title : new Usage : $term = Bio::Ontology::OBOterm->new ( -identifier => "GO:0005623", -name => "Cell", -definition => "The basic structural and functional unit ...", -is_obsolete => 0, -comment => "" ); Function: Creates a new Bio::Ontology::OBOterm. Returns : A new Bio::Ontology::OBOterm object. Args : -identifier => the id of this OBO term [GO:nnnnnnn] integer of seven digits) -name => the name of this OBO term [scalar] -definition => the definition of this OBO term [scalar] -ontology => the ontology for this term (a Bio::Ontology::OntologyI compliant object) -version => version information [scalar] -is_obsolete => the obsoleteness of this OBO term [0 or 1] -comment => a comment [scalar] perl v5.14.2 2012-03-02 Bio::Ontology::OBOterm(3pm)
Related Man Pages
bio::ontology::documentregistry(3pm) - debian
bio::ontology::oboterm(3pm) - debian
bio::ontology::path(3pm) - debian
bio::ontology::relationshipi(3pm) - debian
bio::ontology::termi(3pm) - debian
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