Query: bio::matrix::scoring
OS: debian
Section: 3pm
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
Bio::Matrix::Scoring(3pm) User Contributed Perl Documentation Bio::Matrix::Scoring(3pm)NAMEBio::Matrix::Scoring - Object which can hold scoring matrix informationSYNOPSISuse Bio::Matrix::Scoring;DESCRIPTIONAn object which can handle AA or NT scoring matrix information. Some transformation properties are available too.FEEDBACKMailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Jason Stajich Email jason-at-bioperl-dot-orgAPPENDIXThe rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Matrix::Scoring->new(); Function: Builds a new Bio::Matrix::Scoring object Returns : an instance of Bio::Matrix::Scoring Args : entropy Title : entropy Usage : $obj->entropy($newval) Function: Example : Returns : value of entropy (a scalar) Args : on set, new value (a scalar or undef, optional) expected_score Title : expected_score Usage : $obj->expected_score($newval) Function: Example : Returns : value of expected (a scalar) Args : on set, new value (a scalar or undef, optional) scale Title : scale Usage : $obj->scale($newval) Function: Example : Returns : value of scale (a scalar) Args : on set, new value (a scalar or undef, optional) scale_value Title : scale_value Usage : $obj->scale_value($newval) Function: Example : Returns : value of scale_value (a scalar) Args : on set, new value (a scalar or undef, optional) description Title : description Usage : $obj->description($newval) Function: Example : Returns : value of description (a scalar) Args : on set, new value (a scalar or undef, optional) database Title : database Usage : $obj->database($newval) Function: Example : Returns : value of database (a scalar) Args : on set, new value (a scalar or undef, optional) lowest_score Title : lowest_score Usage : $obj->lowest_score($newval) Function: Example : Returns : value of lowest_score (a scalar) Args : on set, new value (a scalar or undef, optional) highest_score Title : highest_score Usage : $obj->highest_score($newval) Function: Example : Returns : value of highest_score (a scalar) Args : on set, new value (a scalar or undef, optional) lambda Title : lambda Usage : $obj->lambda($newval) Function: Example : Returns : value of lambda (a scalar) Args : on set, new value (a scalar or undef, optional) H Title : H Usage : $obj->H($newval) Function: Example : Returns : value of H (a scalar) Args : on set, new value (a scalar or undef, optional) perl v5.14.2 2012-03-02 Bio::Matrix::Scoring(3pm)
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