debian man page for bio::graphics::glyph::ragged_ends

Bio::Graphics::Glyph::ragged_ends(3pm)			User Contributed Perl Documentation		    Bio::Graphics::Glyph::ragged_ends(3pm)

NAME
       Bio::Graphics::Glyph::ragged_ends - The "ragged ends" glyph

SYNOPSIS
	 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION
       This is identical to the "box" glyph except that it will draw the subparts of features that contain subfeatures.  The subparts are not
       connected -- use the "segments" glyph for that.	"Generic" is the default glyph used when not otherwise specified.

   OPTIONS
       This glyph provides two extra options to control whether the right and/or left ends of the drawn box are to be drawn "raggedly" with
       zigzags instead of vertical lines.

	 Option        Values	 Default
	 -raggedleft	0 | 1	    1
	 -raggedright	0 | 1	    1
	 -zig		> 3	    4
	 -zag		> 3	    4

       The following options are standard among all Glyphs.  See Bio::Graphics::Glyph for a full explanation.

	 Option      Description		      Default
	 ------      -----------		      -------

	 -fgcolor      Foreground color 	      black

	 -outlinecolor Synonym for -fgcolor

	 -bgcolor      Background color 	      turquoise

	 -fillcolor    Synonym for -bgcolor

	 -linewidth    Line width		      1

	 -height       Height of glyph		      10

	 -font	       Glyph font		      gdSmallFont

	 -connector    Connector type		      0 (false)

	 -connector_color
		       Connector color		      black

	 -pad_top      Top padding		      0

	 -pad_bottom   Bottom padding		      0

	 -label        Whether to draw a label	      0 (false)

	 -description  Whether to draw a description  0 (false)

	 -strand_arrow Whether to indicate	      0 (false)
			strandedness

	 -hilite       Highlight color		      undef (no color)

       -pad_top and -pad_bottom allow you to insert some blank space between the glyph's boundary and its contents.  This is useful if you are
       changing the glyph's height dynamically based on its feature's score.

BUGS
       Please report them.

SEE ALSO
       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
       Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
       Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
       Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
       Bio::Graphics::Glyph::xyplot, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR
       Aaron J Mackey <amackey@pcbi.upenn.edu>.

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.2							    2012-02-20				    Bio::Graphics::Glyph::ragged_ends(3pm)