BP_MRTRANS(1p) User Contributed Perl Documentation BP_MRTRANS(1p)
NAME
bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates
SYNOPSIS
Usage:
bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database] [-sf cDNA sequence format] [-h]
DESCRIPTION
This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans.
The options are:
-o filename - the output filename [default STDOUT]
-of format - output sequence format
(multiple sequence alignment)
[default phylip]
-i filename - the input filename [required]
-if format - input sequence format
(multiple sequence alignment)
[ default clustalw]
-s --seqdb filename - the cDNA sequence database file
-sf --seqformat - the cDNA seq db format (flatfile sequence format)
-h - this help menu
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_MRTRANS(1p)
