debian man page for primer_designer

PRIMER_DESIGNER(1p)					User Contributed Perl Documentation				       PRIMER_DESIGNER(1p)

NAME
       primer_designer.pl -- command-line interface Bio::PrimerDesigner

SYNOPSIS
	   ./primer_designer.pl [options] [dna_sequence or file]

	 Options:

	 -p|--program	Program (default "primer3")
	 -n|--number	Number of primer sets to return (default "5")
	 -b|--binary	Path to binary executable (default "/usr/local/bin")
	 -m|--method	"local" or "remote" (default "local")
	 -u|--url	URL of remote primer3/e-PCR system (default
			  "aceserver.biotech.ubc.ca/cgi-bin/primer_designer.cgi")
	 --list-aliases Print alias list to primer3 input options and exit
	 --list-params	Print a list of primer3/e-PCR input options and exit
	 -h|--help	Print help and exit

DESCRIPTION
       This script tests/demonstrates the Bio::PrimerDesigner interface to primer3 and e-PCR.  It can be used with a local installation of the
       unix binaries or remotely via an HTTP/CGI request.

AUTHOR
       Copyright (C) 2003-2009 Sheldon McKay <mckays@cshl.edu>, Ken Youens-Clark <kclark@cpan.org>.

SEE ALSO
       Bio::PrimerDesigner.

LICENSE
       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; version 3 or any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
       MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
       Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

perl v5.10.0							    2009-08-04						       PRIMER_DESIGNER(1p)