debian man page for bp_taxonomy2tree

BP_TAXONOMY2TREE(1p)					User Contributed Perl Documentation				      BP_TAXONOMY2TREE(1p)

NAME
       taxonomy2tree - Building a taxonomic tree based on the full lineages of a set of species names

DESCRIPTION
       taxonomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s Human taxonomy2tree.PLS: -s Orangutan -s Gorilla -s Chimpanzee -s "Homo
       Sapiens"

       Can also provide -d to specific the directory to store index files in, -o to specific the location of your nodes file, and -a for the names
       file.  Or the option -e to use the web-based entrez taxonomy database if you don't have the flatfiles installed.

       This script requires that the bioperl-run pkg be also installed.

       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump (see Bio::DB::Taxonomy::flatfile for more info) is only necessary
       on the first time running.  This will create the local indexes and may take quite a long time.  However once created, these indexes will
       allow fast access for species to taxon id OR taxon id to species name lookups.

AUTHOR - Gabriel Valiente, reimplemented by Sendu Bala
       Email valiente@lsi.upc.edu Email bix@sendu.me.uk

perl v5.14.2							    2012-03-02						      BP_TAXONOMY2TREE(1p)