debian man page for bp_seqret

BP_SEQRET(1p)						User Contributed Perl Documentation					     BP_SEQRET(1p)

NAME
       bp_seqret - bioperl implementation of sequence fetch from local db (like EMBOSS seqret)

USAGE
       bp_seqret [-f/--format outputformat] [-o/--out/--outfile outfile] [-d/--db dbname] [-i/--id/-s/--seqname seqname1]

       Example usage:

	  bp_seqret -f fasta -db db.fa -i seq1 -i seq2 > output.fas
	  bp_seqret db.fa:seq1 output.fas
	  bp_seqret db.fa:seq1 -o output.fas
	  bp_seqret -db db.fa -o output.fas seq1 seq2 seq3
	  bp_seqret -db db.fa seq1 seq2 seq3 output.fas
	  bp_seqret -db db.fa seq1 seq2 seq3 - > output.fas

       The DB is expected to be a Fasta formatted sequence file with multiple sequences.

       Output format is Fasta by default.

       If no output filename is provided then output is written to STDOUT.  Providing '-' as the output filename will accomplish the same thing.

AUTHOR
       Jason Stajich jason_AT_bioperl-dot-org

perl v5.14.2							    2012-03-02							     BP_SEQRET(1p)