debian man page for bp_mrtrans

BP_MRTRANS(1p)						User Contributed Perl Documentation					    BP_MRTRANS(1p)

NAME
       bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates

SYNOPSIS
       Usage:
	 bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database]  [-sf cDNA sequence format] [-h]

DESCRIPTION
       This script will convert a protein alignment back into a cDNA.  Loosely based on Bill Pearson's mrtrans.

       The options are:

	  -o filename	       - the output filename [default STDOUT]
	  -of format	       - output sequence format
				 (multiple sequence alignment)
				 [default phylip]
	  -i filename	       - the input filename [required]
	  -if format	       - input sequence format
				 (multiple sequence alignment)
				 [ default clustalw]
	  -s --seqdb filename  - the cDNA sequence database file
	  -sf --seqformat      - the cDNA seq db format (flatfile sequence format)
	  -h		       - this help menu

AUTHOR
       Jason Stajich, jason-at-bioperl-dot-org

perl v5.14.2							    2012-03-02							    BP_MRTRANS(1p)