bp_download_query_genbank(1p) debian man page | unix.com

BP_DOWNLOAD_QUERY_GENBANK(1p)				User Contributed Perl Documentation			     BP_DOWNLOAD_QUERY_GENBANK(1p)

NAME
       download_query_genbank - script to query Genbank and retrieve records

USAGE
	download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta

	download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta

   Other options
	Provide ONE of:

	 --query query string OR
	 --queryfile profile file with query OR
	 --gi --gifile file with list of GIs to download

	Database type:

	--db database (nucest, protein, nucleotide)

	-f --format sequence file output format
	-v --verbose debugging output

   Query options
	--maxids maximum number of IDs to retrieve in a set
	--reldate
	--maxdate maxdate for a record
	--mindate minimum date for record
	--datetype edat or mdat (entered or modified)

AUTHOR Jason Stajich
       Jason Stajich, jason-AT-bioperl.org

perl v5.14.2							    2012-03-02					     BP_DOWNLOAD_QUERY_GENBANK(1p)