debian man page for domainrep

DOMAINREP(1e)						     EMBOSS Manual for Debian						     DOMAINREP(1e)

NAME
       domainrep - Reorder DCF file to identify representative structures.

SYNOPSIS
       domainrep -dcfinfile infile -node list -dcfoutfile outfile

       domainrep -help

DESCRIPTION
       domainrep is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Protein:3D
       Structure" command group(s).

OPTIONS
   Input section
       -dcfinfile infile
	   This option specifies the name of DCF file (domain classification file) (input). A 'domain classification file' contains classification
	   and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE.
	   Domain sequence information can be added to the file by using DOMAINSEQS.

   Required section
       -node list
	   This option specifies the node fore reordering the file. Reordering can be done for any specified node in the SCOP or CATH hierarchies.
	   For example by selecting 'Class' entries belonging to the same Class will be reordered in turn. Default value: 1

   Output section
       -dcfoutfile outfile
	   This option specifies the name of DCF file (domain classification file) (output). A 'domain classification file' contains
	   classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and
	   CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop

BUGS
       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO
       domainrep is fully documented via the tfm(1) system.

AUTHOR
       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
	   Wrote the script used to autogenerate this manual page.

COPYRIGHT
       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as
       EMBOSS itself.

DOMALIGN 0.1.0+20100721 					    08/11/2010							     DOMAINREP(1e)