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vborient(1) [debian man page]

vborient(1)							 The VoxBo Manual						       vborient(1)

NAME
vborient - re-orient 3D or 4D image data SYNOPSIS
vborient <infile> <outfile> <new orientation> [-from <orient>] DESCRIPTION
vborient is part of the VoxBo suite of tools for brain image analysis. vborient re-orients 3D and 4D volumes along the major axes, using simple three-letter codes for (R)ight, (L)eft, (I)nferior, (S)uperior, (A)nterior, and (P)osterior. E.g., an axial image in radiological orientation is RPI. To get a complete list of available flags, run the program with no arguments. AVAILABILITY
Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net) for Debian deriva- tives. CAVEATS
VoxBo is provided with no warranty whatsoever. AUTHOR
For an historical roster of the VoxBo development team, visit www.voxbo.org. SEE ALSO
For detailed help on any VoxBo command-line program, run it with no arguments. For graphical programs, use the -h flag. For more help with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org. For information about file format support in VoxBo, see voxbo-fileformats(7). For general information about VoxBo, see voxbo(7). VoxBo January, 2011 (v1.8.5) vborient(1)

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vboverlap(1)							 The VoxBo Manual						      vboverlap(1)

NAME
vboverlap - overlap stats for 3D masks and atlases SYNOPSIS
vboverlap <flag> ... <mask> DESCRIPTION
vboverlap is part of the VoxBo suite of tools for brain image analysis. vboverlap takes as input an atlas map (3D volume with labeled regions) and a mask, and produces a summary of the overlap. It's useful for understanding what regions are impinged by a lesion, or are included by an activated region. To get a complete list of available flags, run the program with no arguments. AVAILABILITY
Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net) for Debian deriva- tives. CAVEATS
VoxBo is provided with no warranty whatsoever. AUTHOR
For an historical roster of the VoxBo development team, visit www.voxbo.org. SEE ALSO
For detailed help on any VoxBo command-line program, run it with no arguments. For graphical programs, use the -h flag. For more help with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org. For information about file format support in VoxBo, see voxbo-fileformats(7). For general information about VoxBo, see voxbo(7). VoxBo January, 2011 (v1.8.5) vboverlap(1)
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