debian man page for vbim

vbim(1) 							 The VoxBo Manual							   vbim(1)

NAME
       vbim - manipulate 3D and 4D volumes

SYNOPSIS
       vbim <flag> ...

DESCRIPTION
       vbim is part of the VoxBo suite of tools for brain image analysis.

       vbim is a multi-purpose program that applies various simple manipulations to 3D and 4D images.

OPTIONS
       vbim performs a set of operations, specified by option flags, in sequence.  To get a complete list of available flags, run the program with
       no arguments.

EXAMPLES
       To get very basic info about a file:

	      vbim foo.nii -info

       To get more detailed information about the data within a mask:

	      vbim foo.nii -regioninfo mask.nii

       To apply a mask to a 3D image and write out the result:

	      vbim image.nii -mask mask.nii -write maskedimage.nii

       To mask a 4D image:

	      vbim image.nii -mask mask.nii -write4D maskedimage.nii

       To average a bunch of 3D volumes:

	      vbim *.nii.gz -average -write mean.nii.gz

       To create a lesion count map from a set of lesion masks:

	      vbim *.nii -count -write count.nii.gz

       To create a 4D volume (20x20x20 voxels, 32-bit int, 10 time points) of random data with a mean of 100 and sd of 10:

	      vbim -newvol 20 20 20 10 int32 -addnoise 100 10 -write3d myvol.nii

NOTES
AVAILABILITY
       Pre-built VoxBo binaries are available for Linux, OSX, and Cygwin, and via the NeuroDebian project (neuro.debian.net)  for  Debian  deriva-
       tives.

CAVEATS
       VoxBo is provided with no warranty whatsoever.

AUTHOR
       For an historical roster of the VoxBo development team, visit www.voxbo.org.

SEE ALSO
       For  detailed  help  on	any VoxBo command-line program, run it with no arguments.  For graphical programs, use the -h flag.  For more help
       with VoxBo, for information about the mailing list, or to report bugs, visit the web site at www.voxbo.org.

       For information about file format support in VoxBo, see voxbo-fileformats(7).  For general information about VoxBo, see voxbo(7).

VoxBo							      January, 2011 (v1.8.5)							   vbim(1)