debian man page for srf2fasta

Debian Man Pages All Man Pages Latest Topics Forum Categories

Query: srf2fasta

OS: debian

Section: 1

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

srf2fasta(1)							   Staden io_lib						      srf2fasta(1)


NAME

       srf2fasta - Converts SRF files to fasta format


SYNOPSIS

       srf2fasta  [-C] srf_archive


DESCRIPTION

       srf2fasta extracts sequences from an SRF archive and writes them in fasta format to stdout.


OPTIONS

       -C     Masks out sequences tagged as bad quality.


EXAMPLES

       To extract only the good quality sequences from runX.srf into runX.fasta.

	   srf2fasta -C runX.srf > runX.fasta


AUTHOR

       James Bonfield, Wellcome Trust Sanger Institute

								   September 19 						      srf2fasta(1)
Related Man Pages
bp_mask_by_search(1p) - debian
kalign(1) - debian
pynast(1) - debian
srf_list(1) - debian
tfbs::patterngen::simplepfm(3pm) - debian
Similar Topics in the Unix Linux Community
Installing Dash Shell on OS X Lion
awk or sed - Convert 2 lines to 1 line
Is UNIX an open source OS ?
A (ksh) Library For and From UNIX.com
My first PERL incarnation... Audio Oscillograph