saint-spc-noctrl(1) debian man page | unix.com

SAINT-SPC-NOCTRL(1)						   User Commands					       SAINT-SPC-NOCTRL(1)

NAME
       saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data

SYNOPSIS
       saint-spc-noctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [fthres] [fgroup] [var] [normalize]

DESCRIPTION
       -burnin and iter: burn-in period and main iteration of MCMC

       -fthres: frequency threshold above which probability is set to 0

       -fgroup: frequency boundary dividing high and low frequency groups

       -var: binary [0/1] indicator for modeling variance of the count data distributions

       -normalize: whether to normalize the counts by total spectral counts

SEE ALSO
       You can download a PDF file with more detailed instructions from

	      http://sourceforge.net/projects/saint-apms/files/

       which is called saint-vignette-<YYYYMonDD>.pdf.

saint-spc-noctrl						    April 2012						       SAINT-SPC-NOCTRL(1)