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mothur(1) [debian man page]

MOTHUR(1)						      General Commands Manual							 MOTHUR(1)

NAME
mothur - sequence analysis suite for research on microbiota SYNOPSIS
mothur [ batchfile ] DESCRIPTION
This manual page documents briefly the mothur command. Mothur seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology commu- nity. It has incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more. In addition to improving the flexibility of these algorithms, a number of other features including calculators and visualization tools were added. SEE ALSO
Online manual http://www.mothur.org/wiki/Mothur_manual AUTHOR
#PACKAGE# was written by <upstream author>. This manual page was written by #USERNAME# <#EMAIL#>, for the Debian project (and may be used by others). 2011-01-30 MOTHUR(1)

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3DEPICT(1)						      General Commands Manual							3DEPICT(1)

NAME
3Depict - 3D scalar point cloud visualization and analysis SYNOPSIS
3depict <file1><file2>... DESCRIPTION
This manual page documents briefly the 3Depict command 3depict is a program that allows for visualisation and analysis of point datasets with associated spectral data. Note that the program is a best-effort system. It is by no means guaranteed that the algorithms in this program are free form errors in implementation, or follow conventions for any specific user-application. OPTIONS
This program has no command line options, other than a sequence of data or XML files to open, the XML files being containing a previous program state (this may be generated from within the program's graphical interface). Currently the program can read "POS" (position) for- matted files, which are simply uncompressed sequences of 4-byte floats (IEEE 597) in (x,y,z,value) form. All other work is done through the graphical interface. As a further note, the XML file format has not been stabilised for the 0.0.x series; and may change between revisions AUTHOR
3Depict was written by D. Haley in 2012 HOMEPAGE
3Depict Project Home : http://threedepict.sourceforge.net This manual page was written by D Haley <mycae@yahoo.com>, for the Debian project (and may be used by others). July 24, 2011 3DEPICT(1)
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