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mipe2dbsts(1) [debian man page]

MIPE2DBSTS(1)						User Contributed Perl Documentation					     MIPE2DBSTS(1)

NAME

       mipe2dbSTS.pl - Generates input file for submission to dbSTS
	 included in output: STS section of dbSTS submission
	 based on MIPE version v1.1
	 arguments: * mipe_file
		    * config file
		    * (optional) list of PCR IDs

	 The config file consists of lines containing a key and a value, separated by an equal sign ('=').
	 The key consists of the lowercase name of the NCBI submission file (see website dbSTS), followed by
	 an underscore and the lowercase name of the field in that file.
	 The following fields should be defined in the config file:
	    pub_title=
	    pub_authors=
	    source_name=
	    source_organism=
	    cont_name=
	    cont_fax=
	    cont_tel=
	    cont_email=
	    cont_lab=
	    cont_inst=
	    cont_addr=
	    protocol_name=
	    protocol_protocol=
	    buffer_name=
	    buffer_buffer=
	    sts_pcr_profile=
	  For protocol_protocol, buffer_buffer and sts_pcr_profile, more lines are necessary (see example).

	  An example of a config file look like this:
	    pub_title=Genetic mapping of chicken SNPs
	    pub_authors=Aerts,J.A.; Veenendaal,T.; Crooijmans,R.P.M.A; Groenen,M.A.M
	    source_name=Chicken genomic DNA
	    source_organism=Gallus gallus
	    cont_name=Jan Aerts
	    cont_fax=+31 317 483929
	    cont_tel=+31 317 483397
	    cont_email=jan.aerts@wur.nl
	    cont_lab=Animal Breeding and Genomics Group
	    cont_inst=Wageningen University
	    cont_addr=PO Box 338, 6700 AH Wageningen, The Netherlands
	    protocol_name=Protocol_Aerts
	    protocol_protocol=Template:    30-60 ng
	    protocol_protocol=Primer:	  each 4 uM
	    protocol_protocol=dNTPs:	each 200 uM
	    protocol_protocol=Taq:	  0.3 units
	    protocol_protocol=Volume:	      12 ul
	    buffer_name=Buffer_Aerts
	    buffer_buffer=MgCl2:	 1.5 mM
	    buffer_buffer=(NH4)2SO4:	  20 mM
	    buffer_buffer=Tris-HCl:	  75 mM
	    buffer_buffer=Tween 20: 0.01% (w/v)
	    buffer_buffer=pH:		    8.8

BUGS

       Unknown. If you encounter one, please let me know (jan.aerts@wur.nl).

SYNOPSIS

       mipe2dbSTS.pl your_file.mipe dbSTS.config <pcr_id1> <pcr_id2>

ADDITIONAL INFO

       See http://mipe.sourceforge.net

AUTHOR

       Jan Aerts (jan.aerts@bbsrc.ac.uk)

perl v5.14.2							    2005-07-20							     MIPE2DBSTS(1)

Check Out this Related Man Page

NPM-CONFIG(1)                                                                                                                        NPM-CONFIG(1)

NAME

       npm-config - Manage the npm configuration files

SYNOPSIS

         npm config set <key> <value> [-g|--global]
         npm config get <key>
         npm config delete <key>
         npm config list [-l] [--json]
         npm config edit
         npm get <key>
         npm set <key> <value> [-g|--global]

         aliases: c

DESCRIPTION

       npm gets its config settings from the command line, environment variables, npmrc files, and in some cases, the package.json file.

       See npm help 5 npmrc for more information about the npmrc files.

       See npm help 7 npm-config for a more thorough discussion of the mechanisms involved.

       The npm config command can be used to update and edit the contents of the user and global npmrc files.

Sub-commands
       Config supports the following sub-commands:

   set
         npm config set key value

       Sets the config key to the value.

       If value is omitted, then it sets it to "true".

   get
         npm config get key

       Echo the config value to stdout.

   list
         npm config list

       Show all the config settings. Use -l to also show defaults. Use --json to show the settings in json format.

   delete
         npm config delete key

       Deletes the key from all configuration files.

   edit
         npm config edit

       Opens the config file in an editor.  Use the --global flag to edit the global config.

SEE ALSO

       o npm help 5 folders

       o npm help 7 config

       o npm help 5 package.json

       o npm help 5 npmrc

       o npm help npm

                                                                   January 2019                                                      NPM-CONFIG(1)
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