mincedit(1) [debian man page]

MINCEDIT(1)							 MINC User's Guide						       MINCEDIT(1)

NAME

       mincedit - edit a MINC file header

SYNOPSIS

       mincedit mincfile [editor]

DESCRIPTION

       mincedit  converts  the	MINC file header to a text version which you can edit in your favourite editor.  If any changes are made, the MINC
       file is regenerated and the image data is copied.  The header is presented in netCDF's  common data form language (CDL).

       -help  Print summary of command-line options and exit.

AUTHOR

       Peter Neelin and Andrew Janke

COPYRIGHT

       Copyright (C) 1993 by Peter Neelin rewrite 2008 Andrew Janke - a.janke@gmail.com

SEE ALSO

       mincdump(1),mincgen(1)

							   $Date: 2008-01-09 14:42:24 $ 					       MINCEDIT(1)

XFM2DEF(1)							 MINC User's Guide							XFM2DEF(1)

NAME

       xfm2def - convert a MNI transform file to a deformation volume

SYNOPSIS

       xfm2def [options] input.xfm def_vol.mnc

DESCRIPTION

       xfm2def	takes  an input transform input.xfm that can consist of a series of concatenated transforms in a single xfm file and converts this
       into a single deformation volume that is output as def_vol.mnc. Note that the output is not a tranform file itself, you can then  make  use
       of this volume in a MINC tranform by creating an .xfm file as such:

	  MNI Transform File

	  Transform_Type = Grid_Transform;
	  Displacement_Volume = def_vol.mnc;

       The output resolution and sampling of the deformation grid must be specified or a default size will be used. (100x100x100 1mm steps centred
       around the origin).

OPTIONS

       -help  Print summary of command-line options and exit.

       -version
	      Print the program's version number and exit.

       -verbose
	      Print out extra progress information while running.

       -clobber
	      Overwrite any existing output file

       -xnelements nx
	      Number of elements along the xspace dimension.

       -ynelements ny
	      Number of elements along the yspace dimension.

       -znelements nz
	      Number of elements along the zspace dimension.

       -xstep xstep
	      Step between voxels along the xspace dimension.

       -ystep ystep
	      Step between voxels along the yspace dimension.

       -zstep zstep
	      Step between voxels along the zspace dimension.

       -xstart xstart
	      Position of centre of first voxel along the xspace dimension.

       -ystart ystart
	      Position of centre of first voxel along the yspace dimension.

       -zstart zstart
	      Position of centre of first voxel along the zspace dimension.

       -xdircos x1 x2 x3
	      Direction cosines for the xspace dimension.

       -ydircos y1 y2 y3
	      Direction cosines for the yspace dimension.

       -zdircos z1 z2 z3
	      Direction cosines for the zspace dimension.

AUTHOR

       Andrew Janke

COPYRIGHTS

       Copyright (C) 2010 Andrew Janke - a.janke@gmail.com

							   $Date: 2010-08-11 04:06:42 $ 						XFM2DEF(1)