MAKEMAT(1) NCBI Tools User's Manual MAKEMAT(1)NAME
makemat - convert binary profiles into portable ASCII form
SYNOPSIS
makemat [-] [-E N] [-G N] [-H] [-P filename] [-S X] [-U str] [-d str] [-z N]
DESCRIPTION
makemat converts a collection of binary profiles, created by the -C option of PSI-BLAST, into portable ASCII form.
OPTIONS
A summary of options is included below.
- Print usage message
-E N Cost to extend a gap (default = 1)
-G N Cost to open a gap (default = 11)
-H Print help; overrides all other arguments
-P filename
Database name for profile database (default = stdin)
-S X Scaling factor for matrix outputs to avoid round-off problems (default = 100)
-U str Underlying Matrix (default = BLOSUM62)
-d str Underlying sequence database used to make profiles (default = nr)
-z N Effective length of the profile database (0 for length of -d option)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO blast(1), copymat(1), /usr/share/doc/blast2/impala.html
NCBI 2004-06-25 MAKEMAT(1)
Check Out this Related Man Page
ASNMACRO(1) NCBI Tools User's Manual ASNMACRO(1)NAME
asnmacro - process ASN.1 biological data per Sequin macros
SYNOPSIS
asnmacro [-] [-b] [-d] [-e] [-i filename] -m filename [-o filename] [-p path] [-r path] [-s str] [-x str]
DESCRIPTION
asnmacro is a command-line tool to run Sequin macros on annotated biological sequence data represented according to NCBI's ASN.1 specifica-
tions.
OPTIONS
A summary of options is included below.
- Print usage message
-b Input is Binary
-d Output is binary
-e Input is a Seq-Entry
-i filename
Single input file
-m filename
Macro file
-o filename
Single Output file
-p path
Path to multiple input files
-r path
Path for Results when processing multiple files
-s str Suffix for stripped (output) files
-x str Suffix for input files with -p (.sqn by default)
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO Psequin(1).
NCBI 2011-09-02 ASNMACRO(1)
I have a string like this.
$str="The astrocyte profile might contribute to the identification of possible therapies in profiles profiling and profiled als.";
Lets consider for example:
a)If user enters the term profile* it should highlight profile,profiles only.
b)If user enters the... (3 Replies)
hai everybody - wish you a happy and prosperous new year
I want to connect to NCBI database and I need to track the updates made on database automatically.
Can I do this in PERL, if yes means , please guide me ...............
Thank You (1 Reply)
Hello,
I am wondering if anyone here knows of a good open source print cost management system for a medium-sized campus to use.
Essentially we just need a system that will charge people a cernatin amount per page printed. If that system can be linked via LDAP to another system, all the... (0 Replies)
Hi! I have an accessible website with many register members. I am wondering if you could help me in taking the first step to integrate associate profiles/message to my new and advance database
Is this something that should be coded from scratch? Or is there existing software that I can integrate... (1 Reply)