Ingests(1) General Commands Manual Ingests(1)NAME
ingests - Build an auxiliary file for multicat
SYNOPSIS
ingests -p <PCR PID> [-m <payload size>]>] <input ts>
DESCRIPTION
Ingests is a companion application designed to manipulate TS files. It reads the PCR values of the file, and builds the auxiliary file that
is necessary for multicat. The combination of ingests and multicat makes a simple and efficient TS file streamer.
OPTIONS -m <payloadsize> Size of the payload
-h Show summary of options
-m <payloadsize>
Size of the payload
-p <PCR PID>
PCR PID to use
SEE ALSO aggregartp(1). desaggregartp(1). multicat(1), offsets(1).
Read the README file for more information about the configuration of ingests.
AUTHOR
ingests was written by Christophe Massiot.
LICENCE
This program is free software; you can redistribute it and/or modify it under the terms of version 2 of the GNU General Public License as
published by the Free Software Foundation.
This manual page was written by Remi Duraffort <ivoire at videolan dot org>, for the Debian project (and may be used by others).
Multicat 1.0 August 23, 2010 Ingests(1)
Check Out this Related Man Page
Bio::PrimerDesigner::epcr(3pm) User Contributed Perl Documentation Bio::PrimerDesigner::epcr(3pm)NAME
Bio::PrimerDesigner::epcr - A class for accessing the epcr binary
SYNOPSIS
use Bio::PrimerDesigner::epcr;
DESCRIPTION
A low-level interface to the e-PCR binary. Uses supplied PCR primers, DNA sequence and stringency parameters to predict both expected and
unexpected PCR products.
METHODS
run
Sets up the e-PCR request for a single primer combination and returns an Bio::PrimerDesigner::Result object
If the permute flag is true, all three possible primer combinations will be tested (ie: forward + reverse, forward + forward, reverse +
reverse)
request
Assembles the e-PCR config file and command-line arguments and send the e-PCR request to the local e-PCR binary or remote server.
verify
Check to make that the e-PCR binary is installed and functioning properly. Since e-PCR returns nothing if no PCR product is found in the
sequence, we have to be able to distinguish between a valid, undefined output from a functioning e-PCR and an undefined output for some
other reason. verify uses sham e-PCR data that is known to produce a PCR product.
binary_name
Defines the binary's name on the system.
list_aliases
There are no aliases to list for epcr.
list_params
Returns a list of e-PCR configuration options. Required e-PCR input is a sequence string or file and the left and right primers. Default
values will be used for the remaining options if none are supplied.
AUTHOR
Copyright (C) 2003-2009 Sheldon McKay <mckays@cshl.edu>, Ken Youens-Clark <kclark@cpan.org>.
LICENSE
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
SEE ALSO
Bio::PrimerDesigner::primer3.
perl v5.10.0 2009-08-04 Bio::PrimerDesigner::epcr(3pm)