debian man page for hmmconvert

Query: hmmconvert

OS: debian

Section: 1

Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar

hmmconvert(1)							   HMMER Manual 						     hmmconvert(1)

NAME
hmmconvert - convert profile file to a HMMER format
SYNOPSIS
hmmconvert [options] <hmmfile>
DESCRIPTION
The hmmconvert utility converts an input profile file to different HMMER formats. By default, the input profile can be in any HMMER format, including old/obsolete formats from HMMER2, ASCII or binary; the output profile is a current HMMER3 ASCII format.
OPTIONS
-h Help; print a brief reminder of command line usage and all available options. -a Output profiles in ASCII text format. This is the default. -b Output profiles in binary format. -2 Output in legacy HMMER2 ASCII text format, in ls (glocal) mode. This allows HMMER3 models to be converted back to a close approxima- tion of HMMER2, for comparative studies. --outfmt <s> Output in a HMMER3 ASCII text format other then the most current one. Valid choices for <s> are 3/b or 3/a. The current format is 3/b, and this is the default. There is a slightly different format 3/a that was used in some alpha test code.
SEE ALSO
See hmmer(1) for a master man page with a list of all the individual man pages for programs in the HMMER package. For complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf); or see the HMMER web page (@HMMER_URL@).
COPYRIGHT
@HMMER_COPYRIGHT@ p@HMMER_LICENSE@ For additional information on copyright and licensing, see the file called COPYRIGHT in your HMMER source distribution, or see the HMMER web page (@HMMER_URL@).
AUTHOR
Eddy/Rivas Laboratory Janelia Farm Research Campus 19700 Helix Drive Ashburn VA 20147 USA http://eddylab.org "
HMMER
@HMMER_VERSION@ @HMMER_DATE@ hmmconvert(1)
Related Man Pages
hmmstat(1) - debian
hmmsim(1) - debian
bio::searchio::hmmer(3pm) - debian
bio::tools::hmmer::domain(3pm) - debian
bio::tools::hmmer::set(3pm) - debian
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