fastx_trimmer(1) debian man page | unix.com

FASTX_TRIMMER(1)						   User Commands						  FASTX_TRIMMER(1)

NAME
       fastx_trimmer - FASTA/Q Trimmer

DESCRIPTION
       usage:  fastx_trimmer  [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon
       (gordon@cshl.edu)

       [-h]   = This helpful help screen.

       [-f N] = First base to keep. Default is 1 (=first base).

       [-l N] = Last base to keep. Default is entire read.

       [-t N] = Trim N nucleotides from the end of the read.

       '-t'   can not be used with '-l' and '-f'.

       [-m MINLEN]
	      = With [-t], discard reads shorter than MINLEN.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
	      = FASTA/Q input file. default is STDIN.

	      [-o OUTFILE] = FASTA/Q output file. default is STDOUT.

SEE ALSO
       The quality of this automatically generated manpage might be insufficient.  It is suggested to visit

	      http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.

fastx_trimmer 0.0.13.2						     May 2012							  FASTX_TRIMMER(1)