FASTQ_TO_FASTA(1) User Commands FASTQ_TO_FASTA(1)
NAME
fastq_to_fasta - Convert FASTQ files to FASTA files
DESCRIPTION
usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu)
[-h] = This helpful help screen.
[-r] = Rename sequence identifiers to numbers.
[-n] = keep sequences with unknown (N) nucleotides.
Default is to discard such sequences.
[-v] = Verbose - report number of sequences.
If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
[-z] = Compress output with GZIP.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA output file. default is STDOUT.
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
fastq_to_fasta 0.0.13.2 May 2012 FASTQ_TO_FASTA(1)
