dcm2nii(1) [debian man page]

DCM2NII(1)							   User Commands							DCM2NII(1)

NAME

       dcm2nii - convert DICOM or PAR/REC image into the NIfTI format

SYNOPSIS

       dcm2nii <options> <sourcenames>

OPTIONS

       -a Anonymize [remove identifying information]: Y,N = Y

       -b load settings from specified inifile, e.g. '-b /etc/mricron.ini'

       -c Collapse input folders: Y,N = N

       -d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y

       -e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y

       -f Source filename [e.g. filename.par -> filename.nii]: Y,N = Y

       -g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = Y

       -i ID  in filename [filename.dcm -> johndoe.nii]: Y,N = Y

       -n output .nii file [if no, create .hdr/.img pair]: Y,N = Y

       -o Output Directory, e.g. '/tmp' (if unspecified, source directory is used)

       -p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y

       -r Reorient image to nearest orthogonal: Y,N

       -s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N

       -v Convert every image in the directory: Y,N = Y

       -x Reorient and crop 3D NIfTI images: Y,N = N

       You can also set defaults by editing /home/michael/.dcm2nii/dcm2nii.ini

EXAMPLES

       dcm2nii -a y /home/joe/Documents/dcm/IM_0116

AUTHOR

       dcm2nii was written by Chris Rorden.

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

SEE ALSO

       mricron(1)

       MRIcron Homepage: http://www.cabiatl.com/mricro/mricron/

Michael Hanke							    April 2010								DCM2NII(1)

NIFTI1_TEST(1)							   User Commands						    NIFTI1_TEST(1)

NAME

       nifti1_test - NIfTI file conversion

SYNOPSIS

       nifti1_test [-n2|-n1|-na|-a2] infile [prefix]

DESCRIPTION

       Converts  NIfTI	files  from  and to ANALYZE 7.5 format, compressed or uncompressed NIfTI files (pair or single file). Additionally one can
       convert NIfTI headers into ASCII format for convenient manipulation of header data.

       If prefix is given, then the options mean:

       -a2 ==> write an ANALYZE 7.5 file pair: prefix.hdr/prefix.img

       -n2 ==> write a NIFTI-1 file pair: prefix.hdr/prefix.img

       -n1 ==> write a NIFTI-1 single file: prefix.nii

       -na ==> write a NIFTI-1 ASCII+binary file: prefix.nia

       -za2 => write an ANALYZE 7.5 file pair:

	      prefix.hdr.gz/prefix.img.gz

       -zn2 => write a NIFTI-1 file pair: prefix.hdr.gz/prefix.img.gz

       -zn1 => write a NIFTI-1 single file: prefix.nii.gz

       -zna => write a NIFTI-1 ASCII+binary file: prefix.nia.gz

	      The default is '-n1'.

       If prefix is not given, then the header info from infile file is printed to stdout.

       Please note that the '.nia' format is NOT part of the NIFTI-1 specification, but is provided mostly for ease of	visualization  (e.g.,  you
       can edit a .nia file and change some header fields, then rewrite it as .nii)

SEE ALSO

       libnifti(1), nifti_tool(1), nifti_stats(1).

       Homepage: http://niftilib.sourceforge.net

AUTHOR

       The NIfTI libraries were written by the NIfTI Data Format Working Group (DFWG, http://nifti.nimh.nih.gov/ ).

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

Michael Hanke							  September 2007						    NIFTI1_TEST(1)