cmtk-split(1) [debian man page]

split(1)					       The Computational Morphometry Toolkit						  split(1)

NAME

       split - Split images

SYNOPSIS

       split InputImage OutputImagePattern

DESCRIPTION

       Split volume image into sub-images, i.e., to separate interleaved images into passes

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --axial, -a
	    Interleaved axial images [This is the default]

       --sagittal, -s
	    Interleaved sagittal images

       --coronal, -c
	    Interleaved coronal images

       --interleave-x, -x
	    Interleaved along x axis

       --interleave-y, -y
	    Interleaved along y axis

       --interleave-z, -z
	    Interleaved along z axis [This is the default]

       --factor <integer>, -f <integer>
	    Interleave factor. This is the number of subimages generated.  [Default: 2]

       --padded, -p
	    Padded output, i.e., fill in removed slices

       --output-xform-path <string>
	    Optional  path  template  (fprintf-style)  for  output  affine  transformation that maps input image coordinates to each output image.
	    [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 							  split(1)

destripe(1)					       The Computational Morphometry Toolkit					       destripe(1)

NAME

       destripe - Destripe volume image data.

SYNOPSIS

       destripe InputImage OutputImage

DESCRIPTION

       This program corrects stripe artifacts in acquired image stacks which can result from between-slice intensity scale differences.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Slice Orientation
       --slice-axis
	    Define  slice  direction axis: this is the through-slice direction of the acquisition.  Supported values: "guess-from-input", "axial",
	    "sagittal", "coronal", "slice-x", "slice-y", "slice-z", where the default is "guess-from-input", or use one of the following:

	    --guess-from-input
		 Guess from input image [This is the default]

	    --axial, -a
		 Sliced axial images

	    --sagittal, -s
		 Sliced sagittal images

	    --coronal, -c
		 Sliced coronal images

	    --slice-x, -x
		 Sliced along x axis

	    --slice-y, -y
		 Sliced along y axis

	    --slice-z, -z
		 Sliced along z axis

       --kernel-fwhm <double>
	    Gaussian kernel full width at half maximum (FWHM) in units of slice indexes.  [Default: 1]

       --kernel-radius <integer>
	    Truncate kernel radius to this many samples. By default, kernel width is determined to limit approximation error.  [Default: 0]

       --write-float
	    Write output image in floating point representation. By default, write using input image pixel data type.

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						       destripe(1)