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cmtk-mat2dof(1) [debian man page]

mat2dof(1)					       The Computational Morphometry Toolkit						mat2dof(1)

NAME
mat2dof - Matrix to degrees of freedom SYNOPSIS
mat2dof [options] < matrix DESCRIPTION
Convert transformation matrix to degrees of freedom OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --matrix3x3, -3 Only input upper left 3x3 submatrix. --transpose, -t Transpose input matrix. --inverse, -i Output inverse transformation. --center <string>, -c <string> Set center x,y,z for rotation and scaling. [Default: NONE] --offset <string>, -o <string> Set offset dx,dy,dz for translation. [Default: NONE] --xlate <string>, -x <string> Translate result relative by given vector. [Default: NONE] --pixel-size <string>, -p <string> For matrices in pixel space, set pixel size. [Default: NONE] --list <string>, -l <string> Write output in list format to this archive [Default: NONE] --append <string>, -A <string> Append output to this archive [Default: disabled] AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 mat2dof(1)

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reorient(1)					       The Computational Morphometry Toolkit					       reorient(1)

NAME
reorient - Reorientation SYNOPSIS
reorient [options] new-orientation infile outfile DESCRIPTION
Convert between image orientations, i.e., physically re-order pixel array and adapt stored anatomical orientation information OPTIONS
Global Toolkit Options (these are shared by all CMTK tools) --help Write list of basic command line options to standard output. --help-all Write complete list of basic and advanced command line options to standard output. --wiki Write list of command line options to standard output in MediaWiki markup. --man Write man page source in 'nroff' markup to standard output. --version Write toolkit version to standard output. --echo Write the current command line to standard output. --verbose-level <integer> Set verbosity level. --verbose, -v Increment verbosity level by 1 (deprecated; supported for backward compatibility). --threads <integer> Set maximum number of parallel threads (for POSIX threads and OpenMP). Main Options --input-orientation <string>, -i <string> Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc. [Default: NONE] --output-orientation <string>, -o <string> Override output orientation. Default is 'RAS', or the closest match supported by the output image file format [Default: NONE] --output-space <string> Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect the array order. Default is to write image in the input image space. [Default: NONE] AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff LICENSE
http://www.fsf.org/licensing/licenses/gpl.html BUGS
Report bugs at http://nitrc.org/projects/cmtk/ ACKNOWLEDGMENTS
From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing). CMTK 2.2.2 Jul 20 2012 reorient(1)

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