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cmtk-fit_spline_xform(1) [debian man page]

fit_spline_xform(1)				       The Computational Morphometry Toolkit				       fit_spline_xform(1)

NAME

       fit_spline_xform - Fit Single B-Spline Transformation to Concatenated Transformation List

SYNOPSIS

       fit_spline_xform InputImage XformList

DESCRIPTION

       Fit a parametric nonrigid transformation (B-spline free-form deformation) to a list of concatenated, optionally inverted, transformations.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Fitting Options
       --levels <integer>
	    Number of levels in the multi-level B-spline approximation procedure.  [Default: 1]

       --fit-affine-first
	    Fit affine transformation first, then initialize spline with it.

       --final-cp-spacing <double>
	    Final control point grid spacing of the output B-spline transformation.  [Default: 0]

       --final-cp-dims <string>
	    Final  control  point  grid  dimensions  (i.e.,  number  of  controlpoints)  of  the output B-spline transformation. To be provided as
	    'dimX,dimY,dimZ'.  [Default: NONE]

   Input Options
       --inversion-tolerance <double>
	    Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase  failure  rate.
	    [Default: 1e-08]

   Output Options
       --output <transformation-path>, -o <transformation-path>
	    Path for the output transformation.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 					       fit_spline_xform(1)

Check Out this Related Man Page

vtkxform(1)					       The Computational Morphometry Toolkit					       vtkxform(1)

NAME

       vtkxform - Apply coordinate transformation to point coordinates in VTK file.

SYNOPSIS

       vtkxform XformList

DESCRIPTION

       An  ASCII-format VTK file is read from standard input and a user-provided coordinate transformation (optionally inverted) is applied to the
       vertex coordinates.  A VTK file with transformed points is then written to standard output.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --inversion-tolerance <double>
	    Numerical tolerance of B-spline inversion in mm. Smaller values will lead to more accurate inversion, but may increase  failure  rate.
	    [Default: 0.001]

       --source-image <string>
	    Set source image of the transformation (i.e., the image that the transformation maps points FROM) to correct for differences in orien-
	    tation and coordinate space.  [Default: NONE]

       --target-image <string>
	    Set target image of the transformation (i.e., the image that the transformation maps points TO) to correct for differences in orienta-
	    tion and coordinate space.	[Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From  April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						       vtkxform(1)
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