caret(1) [debian man page]

CARET(1)																  CARET(1)

NAME

       caret - interactive viewing, manipulation and analysis of surface reconstructions of the cerebral and cerebellar cortex

DESCRIPTION

       Caret  is  a  software application for viewing and manipulating surface reconstructions of the cerebral and cerebellar cortex, viewing vol-
       umes, for displaying experimental data on the surfaces and volumes and performing functional and structural analysis of the  cerebral  cor-
       tex.

       Besides	the  main  GUI application, the Caret software package provides a command line interface caret_command that significantly improves
       the efficiency when analyzing a large number of datasets.

       caret_command provides an extensive help output when called with the -help option.

       Questions  regarding  the  usage  of  Caret  or	related  theory  can  be  posted  on   the   Caret   mailing   list   (see   http://brain-
       vis.wustl.edu/caret/#Help).

SEE ALSO

       The Caret homepage at http://brainvis.wustl.edu/caret which provides extensive documentation, including tutorials and demo datasets.

AUTHOR

       Caret was written by John Harwell, Heather Drury, Donna Hanlon and David Van Essen; Washington University School of Medicine

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

Michael Hanke							   December 2007							  CARET(1)

DCM2NII(1)							   User Commands							DCM2NII(1)

NAME

       dcm2nii - convert DICOM or PAR/REC image into the NIfTI format

SYNOPSIS

       dcm2nii <options> <sourcenames>

OPTIONS

       -a Anonymize [remove identifying information]: Y,N = Y

       -b load settings from specified inifile, e.g. '-b /etc/mricron.ini'

       -c Collapse input folders: Y,N = N

       -d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y

       -e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y

       -f Source filename [e.g. filename.par -> filename.nii]: Y,N = Y

       -g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = Y

       -i ID  in filename [filename.dcm -> johndoe.nii]: Y,N = Y

       -n output .nii file [if no, create .hdr/.img pair]: Y,N = Y

       -o Output Directory, e.g. '/tmp' (if unspecified, source directory is used)

       -p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y

       -r Reorient image to nearest orthogonal: Y,N

       -s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N

       -v Convert every image in the directory: Y,N = Y

       -x Reorient and crop 3D NIfTI images: Y,N = N

       You can also set defaults by editing /home/michael/.dcm2nii/dcm2nii.ini

EXAMPLES

       dcm2nii -a y /home/joe/Documents/dcm/IM_0116

AUTHOR

       dcm2nii was written by Chris Rorden.

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but may be used by others).

SEE ALSO

       mricron(1)

       MRIcron Homepage: http://www.cabiatl.com/mricro/mricron/

Michael Hanke							    April 2010								DCM2NII(1)