Query: saint-spc-ctrl
OS: debian
Section: 1
Format: Original Unix Latex Style Formatted with HTML and a Horizontal Scroll Bar
SAINT-SPC-CTRL(1) General Commands Manual SAINT-SPC-CTRL(1)NAMEsaint-spc-ctrl - run SAINT with control dataSYNOPSISsaint-spc-ctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [lowMode] [minFold] [normalize]DESCRIPTIONnburnin = 2000: number of burn-in iterations in MCMC. niter = 10000: number of main iterations in MCMC. lowMode = 0/1 : exclude extremely high counts in the model. - If baits are densely connected or dataset is small (few baits), use 1. - otherwise, use 0. minFold = 0/1 : forcing separation between true and false distributions. - If user wishes to allow typical contaminants with significant differential enrichment over control purifications, use 0. - otherwise, use 1. normalize = 0/1 : divide the counts by the total spectral counts in each IP. nburnin = 2000: number of burn-in iterations in MCMC. niter = 10000: number of main iterations in MCMC. lowMode = 0/1 : exclude extremely high counts in the model. - If baits are densely connected or dataset is small (few baits), use 1. - otherwise, use 0. minFold = 0/1 : forcing separation between true and false distributions. - If user wishes to allow typical contaminants with significant differential enrichment over control purifications, use 0. - otherwise, use 1. normalize = 0/1 : divide the counts by the total spectral counts in each IP.SEE ALSOYou can download a PDF file with more detailed instructions from http://sourceforge.net/projects/saint-apms/files/ which is called saint-vignette-<YYYYMonDD>.pdf. User Commands April 2012 SAINT-SPC-CTRL(1)
Related Man Pages |
---|
maphimbu(1) - debian |
saint-spc-ctrl(1) - debian |
wc(1) - debian |
monitor(3c) - hpux |
ioclasscount(8) - osx |
Similar Topics in the Unix Linux Community |
---|
How I can burn .bin type file ?! |
how to burn these files...? |
Help with tokenizer |
comparing files - adding/subtracting/formating columns |
Shortcut keys are not working |