Sponsored Content
Top Forums Programming How to make use others' C library installed not for the system-wide (Ubuntu/Linux)? Post 303042977 by Neo on Wednesday 15th of January 2020 12:04:38 AM
Old 01-15-2020
First, I suggest when troubleshooting, you should:

Use the full path name to file, not relative path name. This will insure there are no strange, unseen PATH issues. For example:

Code:
gcc -Wall -O3 -I ./htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

I would change this to:

Code:
gcc -Wall -O3 -I /FULL/PATH/TO/HERE/htslib-1.10.2/htslib  -o vcf_parser01 vcf.c  vcf_parser01.c

Second, you should confirm that these objects are in the PATH, exactly, and that you have read / access permission for them.

Sometimes, even the best sys admins install code under one userid, then they work as another userid, and they do not have permissions to access the file. Happens all the time (at least to me, LOL).

This is generally the first two steps I always take (back to basics, before back to the future).
  • Insure your PATH(s) are correct and objects / symbols are in the PATH(s), correctly.
  • Check file and directly permissions for the userid you are using to build.

UNIX and Linux are funny things, they generally do what they are told to do and report back the "facts" as they find them. In your case, gcc cannot find required symbols and objects. This is generally because they cannot find them, i.e. not in the search PATH or the file/directory permissions are "not as required".

Please post back and let me know if you are certain your PATHs are correct and why, using the FULL PATH names to files and directories in your command line for gcc.

Since we are not "standing behind you, watching you type", we cannot "see" what directory you are in, so to be sure, it is always best to use FULL PATH names when troubleshooting a problem like this.

Thanks.
This User Gave Thanks to Neo For This Post:
 

9 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

links working system wide

I have created symbolic links to several frequently used commands, for example: "lt" is a link to "ls -ltrgo|tail". What can I do to make these links available system-wide, or at least in the directories my coworkers are in most of the time? I have copied the link to several directories, and... (6 Replies)
Discussion started by: jpprial
6 Replies

2. UNIX for Advanced & Expert Users

System wide CDE setup

Does anyone know how to make system wide changes to the CDE's front panel icons? I dont know if it matters but im running Solaris 9. THanks (1 Reply)
Discussion started by: meyersp
1 Replies

3. UNIX for Dummies Questions & Answers

FIND function - system wide

Hi, I have a task to search for a file called 'Xstartup' in the whole system because there might be different versions of it which overrite eachother. Can anyone suggest a smart command to run this search ? The machine needs to scan every single folder beginning from root. Please help, I am... (5 Replies)
Discussion started by: DGoubine
5 Replies

4. Filesystems, Disks and Memory

How to mount/make a FAT system on Linux

Yea i was wondering how i would mount, and create a FAT directory that way i can save files in the FAT directory in a windows system and be able to access them on Linux systems. Or if there is any other way to share files between Linux and Windows. Any responds will help... thanks! (2 Replies)
Discussion started by: kyoist
2 Replies

5. Shell Programming and Scripting

system wide password change

Hello, I am new to shell scripting and I was trying to write a script that would force a system wide password change except for admins. I am having some trouble and any help that someone could give me would be greatly appreciated. I am trying to do it by using the UID as the marker for anyone... (6 Replies)
Discussion started by: kilemark
6 Replies

6. Linux

System wide find and sort

Hi, I need to look for a config file (ldap.conf) and pick the latest modified file. `locate` tells me there are many ldap.conf's, some in /etc, /usr, /home, etc. Is there some way I can sort them by last modified time via bash? I was thinking maybe I could pipe the output of `locate` to `ls... (4 Replies)
Discussion started by: Housni
4 Replies

7. Linux

How to run User-mode Linux installed with synaptic package manager in Ubuntu 10.10

I have installed user-mode linux kernel in Ubuntu 10.10 with the help of Synaptic package manager. But I'm not getting how to run it. If we install it manually, we've to run it using the executable binary file. But here, I'm unable to locate any such file. Please help.... Thanking You.... ... (0 Replies)
Discussion started by: rohitadeshmukh1
0 Replies

8. Red Hat

Changing system-wide for umask

Hi everybody, How can I change the default UMASK for non root users, e.g. I want the umask for every new created user will be 0044. Thanks (6 Replies)
Discussion started by: leo_ultra_leo
6 Replies

9. Shell Programming and Scripting

System-wide search

When looking for wherever a program or a filename appears in the system, a short scrip is "findinner" which another script calls with a long parameter list consisting of path names ending with ".sh" or ".menu". "findinner" looks like this: # If not .savenn file, show name and result of grep. #... (4 Replies)
Discussion started by: wbport
4 Replies
Env(3pm)						 Perl Programmers Reference Guide						  Env(3pm)

NAME
Env - perl module that imports environment variables as scalars or arrays SYNOPSIS
use Env; use Env qw(PATH HOME TERM); use Env qw($SHELL @LD_LIBRARY_PATH); DESCRIPTION
Perl maintains environment variables in a special hash named %ENV. For when this access method is inconvenient, the Perl module "Env" allows environment variables to be treated as scalar or array variables. The "Env::import()" function ties environment variables with suitable names to global Perl variables with the same names. By default it ties all existing environment variables ("keys %ENV") to scalars. If the "import" function receives arguments, it takes them to be a list of variables to tie; it's okay if they don't yet exist. The scalar type prefix '$' is inferred for any element of this list not prefixed by '$' or '@'. Arrays are implemented in terms of "split" and "join", using $Config::Config{path_sep} as the delimiter. After an environment variable is tied, merely use it like a normal variable. You may access its value @path = split(/:/, $PATH); print join(" ", @LD_LIBRARY_PATH), " "; or modify it $PATH .= ":."; push @LD_LIBRARY_PATH, $dir; however you'd like. Bear in mind, however, that each access to a tied array variable requires splitting the environment variable's string anew. The code: use Env qw(@PATH); push @PATH, '.'; is equivalent to: use Env qw(PATH); $PATH .= ":."; except that if $ENV{PATH} started out empty, the second approach leaves it with the (odd) value "":."", but the first approach leaves it with ""."". To remove a tied environment variable from the environment, assign it the undefined value undef $PATH; undef @LD_LIBRARY_PATH; LIMITATIONS
On VMS systems, arrays tied to environment variables are read-only. Attempting to change anything will cause a warning. AUTHOR
Chip Salzenberg <chip@fin.uucp> and Gregor N. Purdy <gregor@focusresearch.com> perl v5.16.2 2012-10-11 Env(3pm)
All times are GMT -4. The time now is 10:16 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy