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Top Forums UNIX for Beginners Questions & Answers How to copy particular files from a multiple directories and paste in a new directory? Post 303042516 by MadeInGermany on Friday 27th of December 2019 01:37:37 PM
Old 12-27-2019
Your problem is the wrong destination in the cp command; it must be dir/file.
Together with a few improvements:
Code:
a=1
for i in */dnaG.fasta
do
  cp "$i" fastcancatg/"$a"_"$i" 
  a=$(( a + 1 ))
done

Previous suggestion should work as well. But a Posix count=$((count+1)) is better portable.

Last edited by MadeInGermany; 12-27-2019 at 02:44 PM..
This User Gave Thanks to MadeInGermany For This Post:
 

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virt-copy-out(1)					      Virtualization Support						  virt-copy-out(1)

NAME
virt-copy-out - Copy files and directories out of a virtual machine disk image. SYNOPSIS
virt-copy-out -a disk.img /file|dir [/file|dir ...] localdir virt-copy-out -d domain /file|dir [/file|dir ...] localdir DESCRIPTION
"virt-copy-out" copies files and directories out of a virtual machine disk image or named libvirt domain. You can give one of more filenames and directories on the command line. Directories are copied out recursively. EXAMPLES
Download the home directories from a virtual machine: mkdir homes virt-copy-out -d MyGuest /home homes JUST A SHELL SCRIPT WRAPPER AROUND GUESTFISH
This command is just a simple shell script wrapper around the guestfish(1) "copy-out" command. For anything more complex than a trivial copy, you are probably better off using guestfish directly. OPTIONS
Since the shell script just passes options straight to guestfish, read guestfish(1) to see the full list of options. SEE ALSO
guestfish(1), virt-cat(1), virt-copy-in(1), virt-edit(1), virt-tar-in(1), virt-tar-out(1), http://libguestfs.org/. AUTHORS
Richard W.M. Jones ("rjones at redhat dot com") COPYRIGHT
Copyright (C) 2011-2012 Red Hat Inc. LICENSE
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. BUGS
To get a list of bugs against libguestfs, use this link: https://bugzilla.redhat.com/buglist.cgi?component=libguestfs&product=Virtualization+Tools To report a new bug against libguestfs, use this link: https://bugzilla.redhat.com/enter_bug.cgi?component=libguestfs&product=Virtualization+Tools When reporting a bug, please supply: o The version of libguestfs. o Where you got libguestfs (eg. which Linux distro, compiled from source, etc) o Describe the bug accurately and give a way to reproduce it. o Run libguestfs-test-tool(1) and paste the complete, unedited output into the bug report. libguestfs-1.22.6 2013-08-24 virt-copy-out(1)
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